| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
|
|
|
|||||||
|
|||||||||
1DSM-Deutsche Sammlung von Mikrooiganismen und Zellkulturen GmbH, 38124 Braunschweig, Germany
2Department for Microbiology, The University of Queensland, Brisbane 4072, Queensland, Australia
* Corresponding author. Mailing address: DSM-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Mascheroder Weg 1b, 38124 Braunschweig, Germany. Phone: 49 531 2616 352. Fax: 49 531 2616 418. Electronic mail address: Stackebrandt{at}venus.gbf-braunschweig.d400.de.
ABSTRACT
Because a natural entity "species" cannot be recognized as a group of strains that is genetically well separated from its phylogenetic neighbors, a pragmatic approach was taken to define a species by a polyphasic approach (L. G. Wayne, D. J. Brenner, R. R. Colwell, P. A. D. Grimont, O. Kandler, M. I. Krichevsky, L. H. Moore, W. E. C. Moore, R. G. E. Murray, E. Stackebrandt, M. P. Starr, and H. G. Trüper, Int. J. Syst. Bacteriol. 37:463-464, 1987), in which a DNA reassociation value of about 70% plays a dominant role. With the establishment of rapid sequence analysis of 16S rRNA and the recognition of its potential to determine the phylogenetic position of any prokaryotic organism, the role of 16S rRNA similarities in the present species definition in bacteriology needs to be clarified. Comparative studies clearly reveal the limitations of the sequence analysis of this conserved gene and gene product in the determination of relationships at the strain level for which DNA-DNA reassociation experiments still constitute the superior method. Since today the primary structure of 16S rRNA is easier to determine than hybridization between DNA strands, the strength of the sequence analysis is to recognize the level at which DNA pairing studies need to be performed, which certainly applies to similarities of 97% and higher.
This article has been cited by other articles:
|
|
 |
|
  H.-Y. Weon, S.-H. Yoo, S.-B. Hong, S.-W. Kwon, E. Stackebrandt, S.-J. Go, and B.-S. Koo Polaromonas jejuensis sp. nov., isolated from soil in Korea Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1525 - 1528. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
X. Wang, Y. Xue, S. Yuan, C. Zhou, and Y. Ma Salinicoccus halodurans sp. nov., a moderate halophile from saline soil in China Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1537 - 1541. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Cai, X.-Y. Zhi, S.-K. Tang, Y.-Q. Zhang, L.-H. Xu, and W.-J. Li Streptomonospora halophila sp. nov., a halophilic actinomycete isolated from a hypersaline soil Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1556 - 1560. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Rameshkumar, Y. Fukui, T. Sawabe, and S. Nair Vibrio porteresiae sp. nov., a diazotrophic bacterium isolated from a mangrove-associated wild rice (Porteresia coarctata Tateoka) Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1608 - 1615. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Hiraga, Y. Ueno, S. Sukontasing, S. Tanasupawat, and K. Oda Lactobacillus senmaizukei sp. nov., isolated from Japanese pickle Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1625 - 1629. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D.-C. Zhang, H.-R. Li, Y.-H. Xin, H.-C. Liu, B. Chen, Z.-M. Chi, P.-J. Zhou, and Y. Yu Marinomonas arctica sp. nov., a psychrotolerant bacterium isolated from the Arctic Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1715 - 1718. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 P. H. Janssen and M. Kirs Structure of the Archaeal Community of the Rumen Appl. Envir. Microbiol., June 15, 2008; 74(12): 3619 - 3625. [Full Text] [PDF]
|
|
|
|
|
|
J. J. Joyner, R. W. Litaker, and H. W. Paerl Morphological and Genetic Evidence that the Cyanobacterium Lyngbya wollei (Farlow ex Gomont) Speziale and Dyck Encompasses at Least Two Species Appl. Envir. Microbiol., June 15, 2008; 74(12): 3710 - 3717. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Zhou, S. Kang, C. W. Schadt, and C. T. Garten Jr. Spatial scaling of functional gene diversity across various microbial taxa PNAS, June 3, 2008; 105(22): 7768 - 7773. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Zhou, X. Luo, Y. Tang, L. Zhang, Q. Yang, Y. Qiu, and C. Fang Kocuria flava sp. nov. and Kocuria turfanensis sp. nov., airborne actinobacteria isolated from Xinjiang, China Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1304 - 1307. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J.-H. Yoon, P. Schumann, S.-J. Kang, S. Park, and T.-K. Oh Agromyces terreus sp. nov., isolated from soil Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1308 - 1312. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. D. Allen, P. F. Kraus, P. A. Lawson, G. R. Drake, D. L. Balkwill, and R. S. Tanner Desulfovibrio carbinoliphilus sp. nov., a benzyl alcohol-oxidizing, sulfate-reducing bacterium isolated from a gas condensate-contaminated aquifer Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1313 - 1317. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D.-C. Zhang, H.-R. Li, Y.-H. Xin, H.-C. Liu, Z.-M. Chi, P.-J. Zhou, and Y. Yu Phaeobacter arcticus sp. nov., a psychrophilic bacterium isolated from the Arctic Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1384 - 1387. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Liu, H. Liu, C.-X. Zhang, S.-Y. Yang, X.-H. Liu, K.-Y. Zhang, and R. Lai Sphingobacterium siyangense sp. nov., isolated from farm soil Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1458 - 1462. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Q.-M. Liu, L. N. Ten, H.-S. Yu, F.-X. Jin, W.-T. Im, and S.-T. Lee Emticicia ginsengisoli sp. nov., a species of the family 'Flexibacteraceae' isolated from soil of a ginseng field Int J Syst Evol Microbiol, May 1, 2008; 58(5): 1100 - 1105. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J.-H. Nam, W. Bae, and D.-H. Lee Oceanobacillus caeni sp. nov., isolated from a Bacillus-dominated wastewater treatment system in Korea Int J Syst Evol Microbiol, May 1, 2008; 58(5): 1109 - 1113. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Wang, L. N. Ten, H.-G. Lee, W.-T. Im, and S.-T. Lee Olivibacter soli sp. nov., Olivibacter ginsengisoli sp. nov. and Olivibacter terrae sp. nov., from soil of a ginseng field and compost in South Korea Int J Syst Evol Microbiol, May 1, 2008; 58(5): 1123 - 1127. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Miyazaki, Y. Nogi, Y. Ohta, Y. Hatada, Y. Fujiwara, S. Ito, and K. Horikoshi Microbulbifer agarilyticus sp. nov. and Microbulbifer thermotolerans sp. nov., agar-degrading bacteria isolated from deep-sea sediment Int J Syst Evol Microbiol, May 1, 2008; 58(5): 1128 - 1133. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Kato, M. Asahara, K. Goto, H. Kasai, and A. Yokota Methylobacterium persicinum sp. nov., Methylobacterium komagatae sp. nov., Methylobacterium brachiatum sp. nov., Methylobacterium tardum sp. nov. and Methylobacterium gregans sp. nov., isolated from freshwater Int J Syst Evol Microbiol, May 1, 2008; 58(5): 1134 - 1141. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. D. Lee Jiangella alkaliphila sp. nov., an actinobacterium isolated from a cave Int J Syst Evol Microbiol, May 1, 2008; 58(5): 1176 - 1179. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J.-H. Yoon, S.-J. Kang, and T.-K. Oh Roseovarius aestuarii sp. nov., isolated from a tidal flat of the Yellow Sea in Korea Int J Syst Evol Microbiol, May 1, 2008; 58(5): 1198 - 1202. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Zhang, F. Niu, H.-J. Busse, X. Ma, W. Liu, M. Dong, H. Feng, L. An, and G. Cheng Hymenobacter psychrotolerans sp. nov., isolated from the Qinghai--Tibet Plateau permafrost region Int J Syst Evol Microbiol, May 1, 2008; 58(5): 1215 - 1220. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Vatsurina, D. Badrutdinova, P. Schumann, S. Spring, and M. Vainshtein Desulfosporosinus hippei sp. nov., a mesophilic sulfate-reducing bacterium isolated from permafrost Int J Syst Evol Microbiol, May 1, 2008; 58(5): 1228 - 1232. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Zul, G. Wanner, and J. Overmann Massilia brevitalea sp. nov., a novel betaproteobacterium isolated from lysimeter soil Int J Syst Evol Microbiol, May 1, 2008; 58(5): 1245 - 1251. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K.-L. Chhour, L. A. Hinds, E. M. Deane, and N. A. Jacques The microbiome of the cloacal openings of the urogenital and anal tracts of the tammar wallaby, Macropus eugenii Microbiology, May 1, 2008; 154(5): 1535 - 1543. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Liu, R. Liu, S.-Y. Yang, W.-K. Gao, C.-X. Zhang, K.-Y. Zhang, and R. Lai Flavobacterium anhuiense sp. nov., isolated from field soil Int J Syst Evol Microbiol, April 1, 2008; 58(4): 756 - 760. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. W. Lee and S. D. Lee Tessaracoccus flavescens sp. nov., isolated from marine sediment Int J Syst Evol Microbiol, April 1, 2008; 58(4): 785 - 789. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Barbeyron, F. Carpentier, S. L'Haridon, M. Schuler, G. Michel, and R. Amann Description of Maribacter forsetii sp. nov., a marine Flavobacteriaceae isolated from North Sea water, and emended description of the genus Maribacter Int J Syst Evol Microbiol, April 1, 2008; 58(4): 790 - 797. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Kumar, M. Verma, and R. Lal Devosia chinhatensis sp. nov., isolated from a hexachlorocyclohexane (HCH) dump site in India Int J Syst Evol Microbiol, April 1, 2008; 58(4): 861 - 865. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Miyazaki, Y. Nogi, Y. Fujiwara, M. Kawato, K. Kubokawa, and K. Horikoshi Neptunomonas japonica sp. nov., an Osedax japonicus symbiont-like bacterium isolated from sediment adjacent to sperm whale carcasses off Kagoshima, Japan Int J Syst Evol Microbiol, April 1, 2008; 58(4): 866 - 871. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Pineiro-Vidal, C. G. Carballas, O. Gomez-Barreiro, A. Riaza, and Y. Santos Tenacibaculum soleae sp. nov., isolated from diseased sole (Solea senegalensis Kaup) Int J Syst Evol Microbiol, April 1, 2008; 58(4): 881 - 885. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. I. Vela, A. Fernandez, A. Espinosade los Monteros, J. Goyache, P. Herraez, B. Tames, F. Cruz, L. Dominguez, and J. F. Fernandez-Garayzabal Lactobacillus ceti sp. nov., isolated from beaked whales (Ziphius cavirostris) Int J Syst Evol Microbiol, April 1, 2008; 58(4): 891 - 894. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Endo, S. Roos, E. Satoh, H. Morita, and S. Okada Lactobacillus equigenerosi sp. nov., a coccoid species isolated from faeces of thoroughbred racehorses Int J Syst Evol Microbiol, April 1, 2008; 58(4): 914 - 918. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Cerritos, P. Vinuesa, L. E. Eguiarte, L. Herrera-Estrella, L. D. Alcaraz-Peraza, J. L. Arvizu-Gomez, G. Olmedo, E. Ramirez, J. L. Siefert, and V. Souza Bacillus coahuilensis sp. nov., a moderately halophilic species from a desiccation lagoon in the Cuatro Cienegas Valley in Coahuila, Mexico Int J Syst Evol Microbiol, April 1, 2008; 58(4): 919 - 923. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Chassard, E. Delmas, P. A. Lawson, and A. Bernalier-Donadille Bacteroides xylanisolvens sp. nov., a xylan-degrading bacterium isolated from human faeces Int J Syst Evol Microbiol, April 1, 2008; 58(4): 1008 - 1013. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. L. Klassen and J. M. Foght Differences in Carotenoid Composition among Hymenobacter and Related Strains Support a Tree-Like Model of Carotenoid Evolution Appl. Envir. Microbiol., April 1, 2008; 74(7): 2016 - 2022. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. K. Kim, K. C. Lee, H.-M. Oh, and J.-S. Lee Chryseobacterium aquaticum sp. nov., isolated from a water reservoir Int J Syst Evol Microbiol, March 1, 2008; 58(3): 533 - 537. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J.-H. Yoon, S.-Y. Lee, S.-J. Kang, and T.-K. Oh Phycicoccus dokdonensis sp. nov., isolated from soil Int J Syst Evol Microbiol, March 1, 2008; 58(3): 597 - 600. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J.-C. Lee and K.-H. Yoon Paenibacillus woosongensis sp. nov., a xylanolytic bacterium isolated from forest soil Int J Syst Evol Microbiol, March 1, 2008; 58(3): 612 - 616. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y.-G. Chen, X.-L. Cui, D. Fritze, L.-H. Chai, P. Schumann, M.-L. Wen, Y.-X. Wang, L.-H. Xu, and C.-L. Jiang Virgibacillus kekensis sp. nov., a moderately halophilic bacterium isolated from a salt lake in China Int J Syst Evol Microbiol, March 1, 2008; 58(3): 647 - 653. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. F. Carvalho, P. De Marco, A. F. Duque, C. C. Pacheco, D. B. Janssen, and P. M. L. Castro Labrys portucalensis sp. nov., a fluorobenzene-degrading bacterium isolated from an industrially contaminated sediment in northern Portugal Int J Syst Evol Microbiol, March 1, 2008; 58(3): 692 - 698. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. OSHIMA and T. MORIYA A Preliminary Analysis of Microbial and Biochemical Properties of High-Temperature Compost Ann. N.Y. Acad. Sci., March 1, 2008; 1125(1): 338 - 344. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Koeppel, E. B. Perry, J. Sikorski, D. Krizanc, A. Warner, D. M. Ward, A. P. Rooney, E. Brambilla, N. Connor, R. M. Ratcliff, et al. Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics PNAS, February 19, 2008; 105(7): 2504 - 2509. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S.-J. Yang and J.-C. Cho Gaetbulibacter marinus sp. nov., isolated from coastal seawater, and emended description of the genus Gaetbulibacter Int J Syst Evol Microbiol, February 1, 2008; 58(2): 315 - 318. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. V. G. Frandsen, K. Poulsen, E. Kononen, and M. Kilian Diversity of Capnocytophaga species in children and description of Capnocytophaga leadbetteri sp. nov. and Capnocytophaga genospecies AHN8471 Int J Syst Evol Microbiol, February 1, 2008; 58(2): 324 - 336. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. A. Romanenko, M. Uchino, N. Tanaka, G. M. Frolova, and V. V. Mikhailov Lysobacter spongiicola sp. nov., isolated from a deep-sea sponge Int J Syst Evol Microbiol, February 1, 2008; 58(2): 370 - 374. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. H. Park, R. Kim, Z. Aslam, C. O. Jeon, and Y. R. Chung Lysobacter capsici sp. nov., with antimicrobial activity, isolated from the rhizosphere of pepper, and emended description of the genus Lysobacter Int J Syst Evol Microbiol, February 1, 2008; 58(2): 387 - 392. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J.-H. Yoon, S.-J. Kang, S. H. Ryu, C. O. Jeon, and T.-K. Oh Hydrogenophaga bisanensis sp. nov., isolated from wastewater of a textile dye works Int J Syst Evol Microbiol, February 1, 2008; 58(2): 393 - 397. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J.-H. Yoon, S.-J. Kang, M.-H. Lee, and T.-K. Oh Nocardioides hankookensis sp. nov., isolated from soil Int J Syst Evol Microbiol, February 1, 2008; 58(2): 434 - 437. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Berrendero, E. Perona, and P. Mateo Genetic and morphological characterization of Rivularia and Calothrix (Nostocales, Cyanobacteria) from running water Int J Syst Evol Microbiol, February 1, 2008; 58(2): 447 - 460. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B.-Y. Kim, S.-H. Yoo, H.-Y. Weon, Y.-A. Jeon, S.-B. Hong, S.-J. Go, E. Stackebrandt, and S.-W. Kwon Jannaschia pohangensis sp. nov., isolated from seashore sand in Korea Int J Syst Evol Microbiol, February 1, 2008; 58(2): 496 - 499. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S.-Y. Lee, W.-Y. Choi, T.-K. Oh, and J.-H. Yoon Lentibacillus salinarum sp. nov., isolated from a marine solar saltern in Korea Int J Syst Evol Microbiol, January 1, 2008; 58(1): 45 - 49. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P.-P. Liebgott, M. Joseph, M.-L. Fardeau, J.-L. Cayol, E. Falsen, F. Chamkh, A.-I. Qatibi, and M. Labat Clostridiisalibacter paucivorans gen. nov., sp. nov., a novel moderately halophilic bacterium isolated from olive mill wastewater Int J Syst Evol Microbiol, January 1, 2008; 58(1): 61 - 67. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. M. Toth, Z. Keki, Z. G. Homonnay, A. K. Borsodi, K. Marialigeti, and P. Schumann Nocardioides daphniae sp. nov., isolated from Daphnia cucullata (Crustacea: Cladocera) Int J Syst Evol Microbiol, January 1, 2008; 58(1): 78 - 83. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. A. Lawson, E. Moore, and E. Falsen Prevotella amnii sp. nov., isolated from human amniotic fluid Int J Syst Evol Microbiol, January 1, 2008; 58(1): 89 - 92. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y.-G. Kim, Y.-A Jin, C. Y. Hwang, and B. C. Cho Marinobacterium rhizophilum sp. nov., isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica Int J Syst Evol Microbiol, January 1, 2008; 58(1): 164 - 167. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. A. Amoozegar, P. Schumann, M. Hajighasemi, M. Ashengroph, and M. R. Razavi Salinicoccus iranensis sp. nov., a novel moderate halophile Int J Syst Evol Microbiol, January 1, 2008; 58(1): 178 - 183. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Martens, P. Dawyndt, R. Coopman, M. Gillis, P. De Vos, and A. Willems Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium) Int J Syst Evol Microbiol, January 1, 2008; 58(1): 200 - 214. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J.-H. Yoon, S.-J. Kang, S.-Y. Lee, and T.-K. Oh Sphingomonas insulae sp. nov., isolated from soil Int J Syst Evol Microbiol, January 1, 2008; 58(1): 231 - 236. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C.-C. Young, J.-H. Chou, A. B. Arun, W.-S. Yen, S.-Y. Sheu, F.-T. Shen, W.-A. Lai, P. D. Rekha, and W.-M. Chen Comamonas composti sp. nov., isolated from food waste compost Int J Syst Evol Microbiol, January 1, 2008; 58(1): 251 - 256. [Abstract] [Full Text] [PDF] |
